Trimviz trimming summary: Fastq-bam soft-clipping mode
Input files:
-p (input R1 fastq file):
../tv_data/post_trimmed_R1.fastq.gz
-b (bam file):
../tv_data/alignment.bam
-g (genome fasta file):
../tv_data/genome.fa
Summary of trimming frequency
Trim class
Number of reads
%
uncut
36746
73.5
5pcut
8807
17.6
3pcut
3510
7.0
removed
865
1.7
generated_warning
0
0.0
indel
1305
2.6
ambiguous_cut
0
0.0
Tot unique
50000
3p trim position profile:
5p trim position profile:
Heatmap, 3'-trimmed reads clustered by untrimmed read sequence
Heatmap, 3'-trimmed reads clustered by quality patterns
Heatmaps, 3'-trimmed reads clustered by local reference sequence
Heatmap, 5'-trimmed reads clustered by untrimmed read sequence
Heatmap, 5'-trimmed reads clustered by quality patterns
Heatmaps, 5'-trimmed reads clustered by local reference sequence
Individual read trimming, grouped by trimming class