Trimviz trimming summary: Fastq-bam soft-clipping mode
Input files:
-P (input R2 fastq file):
../tv_data/post_trimmed_R2.fastq.gz
-b (bam file):
../tv_data/alignment.bam
-g (genome fasta file):
../tv_data/genome.fa
Summary of trimming frequency
Trim class
Number of reads
%
uncut
6687
13.4
5pcut
2505
5.0
3pcut
41250
82.5
removed
882
1.8
generated_warning
0
0.0
indel
1249
2.5
ambiguous_cut
0
0.0
Tot unique
50000
3p trim position profile:
5p trim position profile:
Heatmap, 3'-trimmed reads clustered by untrimmed read sequence
Heatmap, 3'-trimmed reads clustered by quality patterns
Heatmaps, 3'-trimmed reads clustered by local reference sequence
Heatmap, 5'-trimmed reads clustered by untrimmed read sequence
Heatmap, 5'-trimmed reads clustered by quality patterns
Heatmaps, 5'-trimmed reads clustered by local reference sequence
Individual read trimming, grouped by trimming class