Generate a modular ShinyCellModular Shiny app

Takes the output files from prepShinyCellModular and writes a ready-to-run app.R with the selected module tabs into out_dir.

useShinyCellModular(
  out_dir,
  shinycellmodular.dir.src = NULL,
  rsconnect.deploy = FALSE,
  data_type = NULL,
  enabled_tabs = NULL,
  overwrite_modules = FALSE,
  disable_ui_server = TRUE,
  app_title = NULL,
  navbar_color = "#007BA7"
)

Arguments

out_dir

Directory containing prepared prepShinyCellModular output files (sc1conf.rds, sc1meta.rds, etc.).

shinycellmodular.dir.src

Path to the ShinyCellModular source directory containing modules/. Default: system.file('', package = 'ShinyCellModular').

rsconnect.deploy

Write an rsconnect manifest for deployment. Default: FALSE.

data_type

Preset tab selection: 'RNA', 'RNA_ATAC', or 'SPATIAL'. Default: 'RNA'.

enabled_tabs

Character vector of tab IDs to include. Overrides data_type presets. Default: NULL (uses all tabs for data_type).

overwrite_modules

Remove and replace existing modules/ folder. Default: FALSE.

disable_ui_server

Rename legacy ui.R and server.R to .bak. Default: TRUE.

app_title

Title shown in the app navbar. Required.

Value

Invisibly returns NULL. Writes app.R and modules/ to out_dir.

Examples

if (FALSE) { # \dontrun{
useShinyCellModular(
  out_dir  = "my_app_files/",
  data_type  = "RNA",
  app_title  = "My scRNA-seq App"
)
} # }