Workshop notes

Key functions to remember

Built-in to R:

lm, anova, model.matrix, coef, sigma, df.residual, predict, confint, summary
I, poly

splines – curve fitting:

ns, bs

multcomp – contrasts and multiple comparisons:

glht, confint, summary

limma and edgeR – fitting many models to gene expression data:

DGEList, calcNormFactors, cpm
lmFit,, eBayes, plotSA, topTable


This course has been developed for the Monash Bioinformatics Platform and Monash Data Fluency by Paul Harrison.

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