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Workshop notes

Key functions to remember

Built-in to R:

lm, anova, model.matrix, coef, sigma, df.residual, predict, confint, summary
I, poly

splines – curve fitting:

ns, bs

multcomp – contrasts and multiple comparisons:

glht, confint, summary

limma and edgeR – fitting many models to gene expression data:

DGEList, calcNormFactors, cpm
lmFit, contrasts.fit, eBayes, plotSA, topTable

Author

This course has been developed for the Monash Bioinformatics Platform and Monash Data Fluency by Paul Harrison.

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.

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