Trimviz trimming summary: Fastq-bam soft-clipping mode
Input files:
-P (input R2 fastq file):
../tv_data/post_trimmed_R2.fastq.gz
-b (bam file):
../tv_data/alignment.bam
-g (genome fasta file):
../tv_data/genome.fa
Summary of trimming frequency
Trim class
Number of reads
3pcut
41250
5pcut
2505
generated_warning
0
indel
1249
removed
882
uncut
6687
Tot unique
50000
3p trim position profile:
5p trim position profile:
Heatmap, 3'-trimmed reads clustered by untrimmed read sequence
Heatmap, 3'-trimmed reads clustered by quality patterns
Heatmaps, 3'-trimmed reads clustered by local reference sequence
Heatmap, 5'-trimmed reads clustered by untrimmed read sequence
Heatmap, 5'-trimmed reads clustered by quality patterns
Heatmaps, 5'-trimmed reads clustered by local reference sequence
Individual read trimming, grouped by trimming class