Read in the polyA peaks gtf file — read_polyA_peak_file

The polyApipe.py script will write a gtf formatted file with the polyA peak locations. This function will read it into a tabular format in R. This is not a general gff/gtf reader funtion - it will break on probably any other gff!

read_polyA_peak_file_gtf(gtf_file)

Arguments

peak_info_file	GTF formatted peak file _specfically_ as output from polyApipe.py

Examples


peak_info_file <- system.file("extdata", "demo_dataset/demo_polyA_peaks.gff", package = "polyApiper") 
peak_info_table <- read_polyA_peak_file_gtf(peak_info_file)