Function reference • polyApiper

Main pipeline functions
`do_ensembl_organism()`	Create a polyApiper organism directory based on ENSEMBL annotation in AnnotationHub
`do_pipeline()`	Analyse the output of polyApipe.py
After the pipeline has run
`load_banquet()`	Load directories lazily, and load RDS and HDF5Array summarized experiments
Lower level functions to load from polyApipe.py
`load_peaks_counts_dir_into_sce()`	Load a directory of peak counts files into a SingleCellExperiment object
`load_peaks_counts_files_into_sce()`	Load multiple peak counts files into a SingleCellExperiment object
`load_peaks_counts_into_sce()`	Load peak counts file into a SingleCellExperiment object
`read_polyA_peak_file_gtf()`	Read in the polyA peaks gtf file

Reference