3 Schedule

Day 1

Time	Content
10:00	Welcome and Housekeeping
	Log in to VM
	Background on ScRNAseq + R tools
	Load data
11:00-11:15	Break (15 mins)
11:15	QC filtering
	Normalisation
12:15 -12:45	Lunch Break
	PCAs and UMAPs
14:00	Finish Day 1

Day 2

Time	Content
10:00	Integration
11:00-11:15	Break (15 mins)
11:15	Clustering
	Cluster Markers
	SingleR
12:15-12:45	Break (15mins)
	Differential Expression
	Main room Discussion on differential expression
14:00	Final remarks and conclusion