Where / how can I run an RNA-seq pipeline ?
At Monash:
Web-based:
- Laxy.io / Degust
- Galaxy Australia
Command line:
- M3 / Monarch HPC clusters
- NeCTAR virtual machine (~32 - 64Gb RAM)
- Your laptop .. while not recommended, you may be able to do this for smaller genomes (bacteria, yeast), and larger genomes if using the Salmon pseudo-mapping protocol