Skip to main content

scRNAseq Analysis in R with Seurat

1 Getting started

Instructors: Paul Harrison & Laura Perlaza-Jimenez

1.1 Summary

This workshop, conducted by the Monash Genomics and Bioinformatics Platform, will cover how to extend analysis to contemporary third-party tools, Seurat, Harmony and SingleR. We will be walking through the Single Cell analysis using Seurat package, correction of batch effects with Harmony and cell annotation using SingleR.

If you are using virtual machine (VM) provided by the workshop, you don’t need to install any R packages. Skip SET UP section.

If you are using your own computer, follow Installation and Setup instructions.